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Java Source Code / Java Documentation » Science » weka » weka.classifiers.bayes 
Source Cross Reference  Class Diagram Java Document (Java Doc) 


java.lang.Object
   weka.classifiers.Classifier
      weka.classifiers.bayes.NaiveBayes

All known Subclasses:   weka.classifiers.bayes.NaiveBayesUpdateable,
NaiveBayes
public class NaiveBayes extends Classifier implements OptionHandler,WeightedInstancesHandler,TechnicalInformationHandler(Code)
Class for a Naive Bayes classifier using estimator classes. Numeric estimator precision values are chosen based on analysis of the training data. For this reason, the classifier is not an UpdateableClassifier (which in typical usage are initialized with zero training instances) -- if you need the UpdateableClassifier functionality, use the NaiveBayesUpdateable classifier. The NaiveBayesUpdateable classifier will use a default precision of 0.1 for numeric attributes when buildClassifier is called with zero training instances.

For more information on Naive Bayes classifiers, see

George H. John, Pat Langley: Estimating Continuous Distributions in Bayesian Classifiers. In: Eleventh Conference on Uncertainty in Artificial Intelligence, San Mateo, 338-345, 1995.

BibTeX:

 @inproceedings{John1995,
 address = {San Mateo},
 author = {George H. John and Pat Langley},
 booktitle = {Eleventh Conference on Uncertainty in Artificial Intelligence},
 pages = {338-345},
 publisher = {Morgan Kaufmann},
 title = {Estimating Continuous Distributions in Bayesian Classifiers},
 year = {1995}
 }
 

Valid options are:

 -K
 Use kernel density estimator rather than normal
 distribution for numeric attributes
 -D
 Use supervised discretization to process numeric attributes
 

author:
   Len Trigg (trigg@cs.waikato.ac.nz)
author:
   Eibe Frank (eibe@cs.waikato.ac.nz)
version:
   $Revision: 1.21 $


Field Summary
final protected static  doubleDEFAULT_NUM_PRECISION
    
protected  Estimatorm_ClassDistribution
     The class estimator.
protected  weka.filters.supervised.attribute.Discretizem_Disc
     The discretization filter.
protected  Estimator[][]m_Distributions
     The attribute estimators.
protected  Instancesm_Instances
    
protected  intm_NumClasses
    
protected  booleanm_UseDiscretization
    
protected  booleanm_UseKernelEstimator
    
final static  longserialVersionUID
    


Method Summary
public  voidbuildClassifier(Instances instances)
     Generates the classifier.
public  double[]distributionForInstance(Instance instance)
     Calculates the class membership probabilities for the given test instance.
public  CapabilitiesgetCapabilities()
     Returns default capabilities of the classifier.
public  String[]getOptions()
     Gets the current settings of the classifier.
public  TechnicalInformationgetTechnicalInformation()
     Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
public  booleangetUseKernelEstimator()
     Gets if kernel estimator is being used.
public  booleangetUseSupervisedDiscretization()
     Get whether supervised discretization is to be used.
public  StringglobalInfo()
    
public  EnumerationlistOptions()
     Returns an enumeration describing the available options.
public static  voidmain(String[] argv)
     Main method for testing this class.
public  voidsetOptions(String[] options)
     Parses a given list of options.
public  voidsetUseKernelEstimator(boolean v)
     Sets if kernel estimator is to be used.
public  voidsetUseSupervisedDiscretization(boolean newblah)
     Set whether supervised discretization is to be used.
public  StringtoString()
     Returns a description of the classifier.
public  voidupdateClassifier(Instance instance)
     Updates the classifier with the given instance.
public  StringuseKernelEstimatorTipText()
    
public  StringuseSupervisedDiscretizationTipText()
    

Field Detail
DEFAULT_NUM_PRECISION
final protected static double DEFAULT_NUM_PRECISION(Code)
The precision parameter used for numeric attributes



m_ClassDistribution
protected Estimator m_ClassDistribution(Code)
The class estimator.



m_Disc
protected weka.filters.supervised.attribute.Discretize m_Disc(Code)
The discretization filter.



m_Distributions
protected Estimator[][] m_Distributions(Code)
The attribute estimators.



m_Instances
protected Instances m_Instances(Code)
The dataset header for the purposes of printing out a semi-intelligible model



m_NumClasses
protected int m_NumClasses(Code)
The number of classes (or 1 for numeric class)



m_UseDiscretization
protected boolean m_UseDiscretization(Code)
Whether to use discretization than normal distribution for numeric attributes



m_UseKernelEstimator
protected boolean m_UseKernelEstimator(Code)
Whether to use kernel density estimator rather than normal distribution for numeric attributes



serialVersionUID
final static long serialVersionUID(Code)
for serialization





Method Detail
buildClassifier
public void buildClassifier(Instances instances) throws Exception(Code)
Generates the classifier.
Parameters:
  instances - set of instances serving as training data
exception:
  Exception - if the classifier has not been generated successfully



distributionForInstance
public double[] distributionForInstance(Instance instance) throws Exception(Code)
Calculates the class membership probabilities for the given test instance.
Parameters:
  instance - the instance to be classified predicted class probability distribution
exception:
  Exception - if there is a problem generating the prediction



getCapabilities
public Capabilities getCapabilities()(Code)
Returns default capabilities of the classifier. the capabilities of this classifier



getOptions
public String[] getOptions()(Code)
Gets the current settings of the classifier. an array of strings suitable for passing to setOptions



getTechnicalInformation
public TechnicalInformation getTechnicalInformation()(Code)
Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on. the technical information about this class



getUseKernelEstimator
public boolean getUseKernelEstimator()(Code)
Gets if kernel estimator is being used. Value of m_UseKernelEstimatory.



getUseSupervisedDiscretization
public boolean getUseSupervisedDiscretization()(Code)
Get whether supervised discretization is to be used. true if supervised discretization is to be used.



globalInfo
public String globalInfo()(Code)
Returns a string describing this classifier a description of the classifier suitable fordisplaying in the explorer/experimenter gui



listOptions
public Enumeration listOptions()(Code)
Returns an enumeration describing the available options. an enumeration of all the available options.



main
public static void main(String[] argv)(Code)
Main method for testing this class.
Parameters:
  argv - the options



setOptions
public void setOptions(String[] options) throws Exception(Code)
Parses a given list of options.

Valid options are:

 -K
 Use kernel density estimator rather than normal
 distribution for numeric attributes
 -D
 Use supervised discretization to process numeric attributes
 

Parameters:
  options - the list of options as an array of strings
exception:
  Exception - if an option is not supported



setUseKernelEstimator
public void setUseKernelEstimator(boolean v)(Code)
Sets if kernel estimator is to be used.
Parameters:
  v - Value to assign to m_UseKernelEstimatory.



setUseSupervisedDiscretization
public void setUseSupervisedDiscretization(boolean newblah)(Code)
Set whether supervised discretization is to be used.
Parameters:
  newblah - true if supervised discretization is to be used.



toString
public String toString()(Code)
Returns a description of the classifier. a description of the classifier as a string.



updateClassifier
public void updateClassifier(Instance instance) throws Exception(Code)
Updates the classifier with the given instance.
Parameters:
  instance - the new training instance to include in the model
exception:
  Exception - if the instance could not be incorporated inthe model.



useKernelEstimatorTipText
public String useKernelEstimatorTipText()(Code)
Returns the tip text for this property tip text for this property suitable fordisplaying in the explorer/experimenter gui



useSupervisedDiscretizationTipText
public String useSupervisedDiscretizationTipText()(Code)
Returns the tip text for this property tip text for this property suitable fordisplaying in the explorer/experimenter gui



Fields inherited from weka.classifiers.Classifier
protected boolean m_Debug(Code)(Java Doc)

Methods inherited from weka.classifiers.Classifier
abstract public void buildClassifier(Instances data) throws Exception(Code)(Java Doc)
public double classifyInstance(Instance instance) throws Exception(Code)(Java Doc)
public String debugTipText()(Code)(Java Doc)
public double[] distributionForInstance(Instance instance) throws Exception(Code)(Java Doc)
public static Classifier forName(String classifierName, String[] options) throws Exception(Code)(Java Doc)
public Capabilities getCapabilities()(Code)(Java Doc)
public boolean getDebug()(Code)(Java Doc)
public String[] getOptions()(Code)(Java Doc)
public Enumeration listOptions()(Code)(Java Doc)
public static Classifier[] makeCopies(Classifier model, int num) throws Exception(Code)(Java Doc)
public static Classifier makeCopy(Classifier model) throws Exception(Code)(Java Doc)
protected static void runClassifier(Classifier classifier, String[] options)(Code)(Java Doc)
public void setDebug(boolean debug)(Code)(Java Doc)
public void setOptions(String[] options) throws Exception(Code)(Java Doc)

Methods inherited from java.lang.Object
native protected Object clone() throws CloneNotSupportedException(Code)(Java Doc)
public boolean equals(Object obj)(Code)(Java Doc)
protected void finalize() throws Throwable(Code)(Java Doc)
final native public Class getClass()(Code)(Java Doc)
native public int hashCode()(Code)(Java Doc)
final native public void notify()(Code)(Java Doc)
final native public void notifyAll()(Code)(Java Doc)
public String toString()(Code)(Java Doc)
final native public void wait(long timeout) throws InterruptedException(Code)(Java Doc)
final public void wait(long timeout, int nanos) throws InterruptedException(Code)(Java Doc)
final public void wait() throws InterruptedException(Code)(Java Doc)

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