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Java Source Code / Java Documentation » Science » weka » weka.classifiers.bayes.net.search.local 
Source Cross Reference  Class Diagram Java Document (Java Doc) 


weka.classifiers.bayes.net.search.local.LocalScoreSearchAlgorithm
   weka.classifiers.bayes.net.search.local.K2

K2
public class K2 extends LocalScoreSearchAlgorithm implements TechnicalInformationHandler(Code)
This Bayes Network learning algorithm uses a hill climbing algorithm restricted by an order on the variables.

For more information see:

G.F. Cooper, E. Herskovits (1990). A Bayesian method for constructing Bayesian belief networks from databases.

G. Cooper, E. Herskovits (1992). A Bayesian method for the induction of probabilistic networks from data. Machine Learning. 9(4):309-347.

Works with nominal variables and no missing values only.

BibTeX:

 @proceedings{Cooper1990,
 author = {G.F. Cooper and E. Herskovits},
 booktitle = {Proceedings of the Conference on Uncertainty in AI},
 pages = {86-94},
 title = {A Bayesian method for constructing Bayesian belief networks from databases},
 year = {1990}
 }
 @article{Cooper1992,
 author = {G. Cooper and E. Herskovits},
 journal = {Machine Learning},
 number = {4},
 pages = {309-347},
 title = {A Bayesian method for the induction of probabilistic networks from data},
 volume = {9},
 year = {1992}
 }
 

Valid options are:

 -N
 Initial structure is empty (instead of Naive Bayes)
 -P <nr of parents>
 Maximum number of parents
 -R
 Random order.
 (default false)
 -mbc
 Applies a Markov Blanket correction to the network structure, 
 after a network structure is learned. This ensures that all 
 nodes in the network are part of the Markov blanket of the 
 classifier node.
 -S [BAYES|MDL|ENTROPY|AIC|CROSS_CLASSIC|CROSS_BAYES]
 Score type (BAYES, BDeu, MDL, ENTROPY and AIC)

author:
   Remco Bouckaert (rrb@xm.co.nz)
version:
   $Revision: 1.6 $


Field Summary
 booleanm_bRandomOrder
    
final static  longserialVersionUID
    


Method Summary
public  voidbuildStructure(BayesNet bayesNet, Instances instances)
     buildStructure determines the network structure/graph of the network with the K2 algorithm, restricted by its initial structure (which can be an empty graph, or a Naive Bayes graph.
public  booleangetInitAsNaiveBayes()
    
public  intgetMaxNrOfParents()
     Gets the max number of parents.
public  String[]getOptions()
     Gets the current settings of the search algorithm.
public  booleangetRandomOrder()
    
public  TechnicalInformationgetTechnicalInformation()
     Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
public  StringglobalInfo()
     This will return a string describing the search algorithm.
public  EnumerationlistOptions()
     Returns an enumeration describing the available options.
public  StringrandomOrderTipText()
    
public  voidsetInitAsNaiveBayes(boolean bInitAsNaiveBayes)
    
public  voidsetMaxNrOfParents(int nMaxNrOfParents)
    
public  voidsetOptions(String[] options)
     Parses a given list of options.
public  voidsetRandomOrder(boolean bRandomOrder)
    

Field Detail
m_bRandomOrder
boolean m_bRandomOrder(Code)
Holds flag to indicate ordering should be random *



serialVersionUID
final static long serialVersionUID(Code)
for serialization





Method Detail
buildStructure
public void buildStructure(BayesNet bayesNet, Instances instances) throws Exception(Code)
buildStructure determines the network structure/graph of the network with the K2 algorithm, restricted by its initial structure (which can be an empty graph, or a Naive Bayes graph.
Parameters:
  bayesNet - the network
Parameters:
  instances - the data to work with
throws:
  Exception - if something goes wrong



getInitAsNaiveBayes
public boolean getInitAsNaiveBayes()(Code)
Gets whether to init as naive bayes whether to init as naive bayes



getMaxNrOfParents
public int getMaxNrOfParents()(Code)
Gets the max number of parents. the max number of parents



getOptions
public String[] getOptions()(Code)
Gets the current settings of the search algorithm. an array of strings suitable for passing to setOptions



getRandomOrder
public boolean getRandomOrder()(Code)
Get random order flag the random order flag



getTechnicalInformation
public TechnicalInformation getTechnicalInformation()(Code)
Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on. the technical information about this class



globalInfo
public String globalInfo()(Code)
This will return a string describing the search algorithm. The string.



listOptions
public Enumeration listOptions()(Code)
Returns an enumeration describing the available options. an enumeration of all the available options.



randomOrderTipText
public String randomOrderTipText()(Code)
a string to describe the RandomOrder option.



setInitAsNaiveBayes
public void setInitAsNaiveBayes(boolean bInitAsNaiveBayes)(Code)
Sets whether to init as naive bayes
Parameters:
  bInitAsNaiveBayes - whether to init as naive bayes



setMaxNrOfParents
public void setMaxNrOfParents(int nMaxNrOfParents)(Code)
Sets the max number of parents
Parameters:
  nMaxNrOfParents - the max number of parents



setOptions
public void setOptions(String[] options) throws Exception(Code)
Parses a given list of options.

Valid options are:

 -N
 Initial structure is empty (instead of Naive Bayes)
 -P <nr of parents>
 Maximum number of parents
 -R
 Random order.
 (default false)
 -mbc
 Applies a Markov Blanket correction to the network structure, 
 after a network structure is learned. This ensures that all 
 nodes in the network are part of the Markov blanket of the 
 classifier node.
 -S [BAYES|MDL|ENTROPY|AIC|CROSS_CLASSIC|CROSS_BAYES]
 Score type (BAYES, BDeu, MDL, ENTROPY and AIC)

Parameters:
  options - the list of options as an array of strings
throws:
  Exception - if an option is not supported



setRandomOrder
public void setRandomOrder(boolean bRandomOrder)(Code)
Set random order flag
Parameters:
  bRandomOrder - the random order flag



Fields inherited from weka.classifiers.bayes.net.search.local.LocalScoreSearchAlgorithm
final public static Tag[] TAGS_SCORE_TYPE(Code)(Java Doc)
BayesNet m_BayesNet(Code)(Java Doc)
double m_fAlpha(Code)(Java Doc)
int m_nScoreType(Code)(Java Doc)
final static long serialVersionUID(Code)(Java Doc)

Methods inherited from weka.classifiers.bayes.net.search.local.LocalScoreSearchAlgorithm
public void buildStructure(BayesNet bayesNet, Instances instances) throws Exception(Code)(Java Doc)
public double calcNodeScore(int nNode)(Code)(Java Doc)
protected double calcScoreOfCounts(int[] nCounts, int nCardinality, int numValues, Instances instances)(Code)(Java Doc)
protected double calcScoreOfCounts2(int[][] nCounts, int nCardinality, int numValues, Instances instances)(Code)(Java Doc)
public double calcScoreWithExtraParent(int nNode, int nCandidateParent)(Code)(Java Doc)
public double calcScoreWithMissingParent(int nNode, int nCandidateParent)(Code)(Java Doc)
public boolean getMarkovBlanketClassifier()(Code)(Java Doc)
public String[] getOptions()(Code)(Java Doc)
public SelectedTag getScoreType()(Code)(Java Doc)
public String globalInfo()(Code)(Java Doc)
public Enumeration listOptions()(Code)(Java Doc)
public double logScore(int nType)(Code)(Java Doc)
public String markovBlanketClassifierTipText()(Code)(Java Doc)
public String scoreTypeTipText()(Code)(Java Doc)
public void setMarkovBlanketClassifier(boolean bMarkovBlanketClassifier)(Code)(Java Doc)
public void setOptions(String[] options) throws Exception(Code)(Java Doc)
public void setScoreType(SelectedTag newScoreType)(Code)(Java Doc)

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