org.griphyn.vdl.dbschema

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Java Source Code / Java Documentation » Workflow Engines » pegasus 2.1.0 » org.griphyn.vdl.dbschema 
org.griphyn.vdl.dbschema
Provides the database schema encapsulation.

Package Specification

The classes in this package provide a database independent abstraction of database access for a variety of catalogs.

To provide an alternative implementation for an existing catalog, you need to:

  1. extend the {@link org.griphyn.vdl.dbschema.DatabaseSchema} class.
  2. implement the appropriate {@link org.griphyn.vdl.dbschema.Catalog} child interface.
To provide an addition catalog implementation, you need to extend the {@link org.griphyn.vdl.dbschema.Catalog} interface. In the next step, you will need to provide an implementation as before.

Currently, several concrete catalogs are implemented in Chimera:

  • The Provenance Tracking Catalog {@link org.griphyn.vdl.dbschema.PTC}
  • The Virtual Data Catalog {@link org.griphyn.vdl.dbschema.VDC}
  • An extension of the VDC {@link org.griphyn.vdl.dbschema.Advanced}
  • Joining attributes to Virtual Data objects {@link org.griphyn.vdl.dbschema.Annotation}

Related Documentation

For overviews, tutorials, examples, guides, and tool documentation, please see: @see org.griphyn.vdl.dbdriver @see org.griphyn.vdl.annotation
Java Source File NameTypeComment
Advanced.javaInterface This common schema interface defines advanced search interfaces for VDC.
Annotation.javaInterface This common schema interface defines the schemas in which the abstraction layers access the metadata associated with VDC elements. This layer is independent of the implementing database, and does so by going via the database driver class API.
author:
   Jens-S.
AnnotationSchema.javaClass This class provides basic functionalities to interact with the backend database, such as insertion, deletion, and search. While the main database layout for storing definitions is derived from the "chunk" schema with minor improvements, the database layout of the annotations is shown in the following figure:

annotation schema

The central five elements that can receive annotations, all depend on the same sequence generator for their primary key.

Catalog.javaInterface This interface groups different but related catalog subinterfaces.

The interface will require implementing classes to provide a constructor that takes one String as only argument.

ChunkSchema.javaClass This class provides basic functionalities to interact with the backend database, such as insertion, deletion, and search of entities in the VDC.
author:
   Jens-S.
DatabaseSchema.javaClass This common schema interface defines the schemas in which the abstraction layers access any given database.
InMemorySchema.javaClass This is a class that falls back not on a real database backend, but rather on an existing Definitions data structure in main memory.
InvocationSchema.javaClass This class provides basic functionalities to interact with the backend database for invocation records, such as insertion, deletion, and search.
author:
   Jens-S.
MyCallbackHandler.javaClass This class adds a given Definition from the parser's callback into the fresh in-memory storage.
NXDInvSchema.javaClass This class provides basic functionalities to interact with the backend database for invocation records, such as insertion, deletion, and search.
author:
   Jens-S.
NXDSchema.javaClass This class provides basic functionalities to interact with the backend database, such as insertion, deletion, and search of entities in the VDC.
author:
   Jens-S.
PTC.javaInterface This interface defines a common base for all database schemas that supports the handling of the provenance tracking catalog.
SingleFileSchema.javaClass This is a class that falls back not on a real database backend, but rather on an existing Definitions data structure that are read from file during construction (or rather, during open), and pushed back into file at destruction (or rather, during close).

While schemas in general should fall back onto drivers to perform actions, it is rather difficult to create a JDBC interface to file operations.

VDC.javaInterface This common schema interface defines the schemas in which the abstraction layers access the VDC.
WF.javaInterface This common schema interface defines the schemas in which the abstraction layers access the WF database.
WorkflowSchema.javaClass This class provides basic functionalities to interact with the backend database for workflow records.
XDC.javaInterface This common schema interface defines advanced search interfaces for VDC.
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