Java Doc for RLI.java in  » Workflow-Engines » pegasus-2.1.0 » org » griphyn » common » catalog » replica » Java Source Code / Java DocumentationJava Source Code and Java Documentation

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Java Source Code / Java Documentation » Workflow Engines » pegasus 2.1.0 » org.griphyn.common.catalog.replica 
Source Cross Reference  Class Diagram Java Document (Java Doc) 


java.lang.Object
   org.griphyn.common.catalog.replica.RLI

RLI
public class RLI implements ReplicaCatalog(Code)
This class implements the VDS replica catalog interface on top of RLI API. A thing to take care of is that all delete and remove operations are propoagated to all the Local Replica Catalogs (LRCs) reporting to the RLI. Hence, you should be careful while deleting LFNs, as deletions can cascade to multiple LRCs. If you want to delete or remove an LFN from a particular LRC, use the LRC implementation to connect to that LRC and call the corresponding delete functions on that. There is no transaction support in the implementation. The implementation is best effort. Inconsistencies can occur if one of the LRCs goes offline, or an operation fails for whatsoever reason.
author:
   Karan Vahi
author:
   Gaurang Mehta
version:
   $Revision: 159 $


Field Summary
final public static  StringDEFAULT_RLI_TIMEOUT
     The default timeout in seconds to be used while querying the RLI.
final public static  StringLRC_IGNORE_KEY
     The key that is used to designate the LRC whose results are to be ignored.
final public static  StringLRC_NOT_CONNECTED_MSG
     The error message for not connected to LRC.
final public static  intLRC_QUERY_IGNORE
     The LRC query state indicating that LRC has to be ignored.
final public static  intLRC_QUERY_NORMAL
     The LRC query state indicating that LRC needs to queried fully.
final public static  intLRC_QUERY_RESTRICT
     The LRC query state indicating that LRC has to be restricted query.
final public static  StringLRC_RESTRICT_KEY
     The key that is used to designate the LRC whose results are to be restricted.
final public static  StringPROXY_KEY
     The key that if set, specifies the proxy to be picked up while connecting to the RLS.
final public static  StringRLI_NOT_CONNECTED_MSG
     The error message for not connected to RLI.
final public static  StringRLI_TIMEOUT_KEY
     The key that is used to get hold of the timeout value from the properties object.
final public static  intRLS_BULK_QUERY_SIZE
     The number of entries searched in each bulk query to RLS.
final public static  StringRLS_TIMEOUT_KEY
     The key that is used to get hold of the timeout value from the properties object.
final public static  StringSITE_ATTRIBUTE
     The attribute in RLS that maps to a site handle.
final public static  StringUNDEFINED_SITE
     The undefined pool attribute value.
final public static  StringURL_KEY
     The key that is used to get hold of the url from the properties object.

Constructor Summary
public  RLI()
     The default constructor, that creates an object which is not linked with any RLS.

Method Summary
public  intclear()
     Removes everything from all the LRCs that report to this RLI.
public  voidclose()
     Explicitely free resources before the garbage collection hits.
public  booleanconnect(String url)
     Establishes a connection to the RLI, picking up the proxy from the default location usually /tmp/ directory.
Parameters:
  url - the url to lrc to connect to.
public  booleanconnect(Properties props)
     Establishes a connection to the RLI.
Parameters:
  props - contains all necessary data to establish the link.
public  booleanconnect(String url, String proxy)
     Establishes a connection to the RLI.
Parameters:
  url - the url to lrc to connect to.
Parameters:
  proxy - the path to the proxy file to be picked up.
public  intdelete(String lfn, String pfn)
     Deletes a specific mapping from the replica catalog.
public  intdelete(String lfn, ReplicaCatalogEntry tuple)
     Deletes a very specific mapping from the replica catalog.
public  intdelete(String lfn, String name, Object value)
     Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
public  intdelete(Map x, boolean matchAttributes)
     Deletes multiple mappings into the replica catalog.
public  intdeleteByResource(String lfn, String handle)
     Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
protected  intgetBatchSize()
     Returns the number of lfns in each batch while querying the lrc in the bulk mode.
public  RLSClient.LRCgetLRC()
     Gets a handle to the LRC that is associated with the RLS running at url.
public  RLSClient.RLIgetRLI()
     Gets a handle to the RLI that is associated with the RLS running at url.
protected  String[]getRLSLRCIgnoreURLs(Properties properties)
     Returns the rls LRC urls to ignore for querying (requested by LIGO). Referred to by the "pegasus.catalog.replica.lrc.ignore" property.
Parameters:
  properties - the properties passed in the connect method.
protected  String[]getRLSLRCRestrictURLs(Properties properties)
     Returns the rls LRC urls to restrict for querying (requested by LIGO). Referred to by the "pegasus.catalog.replica.lrc.restrict" property.
Parameters:
  properties - the properties passed in the connect method.
public  intgetTimeout(Properties properties)
     It returns the timeout value in seconds after which to timeout in case of no activity from the RLI. Referred to by the "rli.timeout" property.
Parameters:
  properties - the properties passed in the connect method.
public  intinsert(String lfn, ReplicaCatalogEntry tuple)
     Inserts a new mapping into the LRC running at the URL, where the RLI is running.
Parameters:
  lfn - is the logical filename under which to book the entry.
Parameters:
  tuple - is the physical filename and associated PFN attributes.
public  intinsert(String lfn, String pfn, String handle)
     Inserts a new mapping into the LRC running at the URL, where the RLI is running. This is a convenience function exposing the resource handle.
public  intinsert(Map x)
     Inserts multiple mappings into the replica catalog.
public  booleanisClosed()
     Returns whether the connection to the RLS with which this instance is associated is closed or not.
public  Setlist()
     Lists all logical filenames in the catalog.
public  Setlist(String constraint)
     Lists a subset of all logical filenames in the catalog.
Parameters:
  constraint - is a constraint for the logical filename only.
public  Stringlookup(String lfn, String handle)
     Retrieves the entry for a given filename and resource handle from the RLS.
Parameters:
  lfn - is the logical filename to obtain information for.
Parameters:
  handle - is the resource handle to obtain entries for.
public  Collectionlookup(String lfn)
     Retrieves all entries for a given LFN from the replica catalog. Each entry in the result set is a tuple of a PFN and all its attributes.
Parameters:
  lfn - is the logical filename to obtain information for.
public  Maplookup(Set lfns)
     Retrieves multiple entries for a given logical filename, up to the complete LRC.
public  Maplookup(Set lfns, String handle)
     Retrieves multiple entries for a given logical filenames, up to the complete catalog.
public  Maplookup(Map constraints)
     Retrieves multiple entries for a given logical filename, up to the complete catalog.
public  SetlookupNoAttributes(String lfn)
     Retrieves all entries for a given LFN from the replica catalog. Each entry in the result set is just a PFN string.
public  MaplookupNoAttributes(Set lfns)
     Retrieves all entries for a given LFN from the replica catalog. Each entry in the result set is just a PFN string.
public  MaplookupNoAttributes(Set lfns, String handle)
     Retrieves multiple entries for a given logical filename, up to the complete catalog.
public static  voidmain(String[] args)
     The main program, for some unit testing.
public  intremove(String lfn)
     Removes all mappings for an LFN from the replica catalog. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfn - is the logical filename to remove all mappings for.
public  intremove(Set lfns)
     Removes all mappings for a set of LFNs. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfns - is a set of logical filename to remove all mappings for.
public  intremoveByAttribute(String name, Object value)
     Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  name - is the PFN attribute name to look for.
Parameters:
  value - is an exact match of the attribute value to match.
public  intremoveByAttribute(String handle)
     Removes all entries associated with a particular resource handle. This is useful, if a site goes offline.
protected  voidsetBatchSize(Properties properties)
     Sets the number of lfns in each batch while querying the lrc in the bulk mode.

Field Detail
DEFAULT_RLI_TIMEOUT
final public static String DEFAULT_RLI_TIMEOUT(Code)
The default timeout in seconds to be used while querying the RLI.



LRC_IGNORE_KEY
final public static String LRC_IGNORE_KEY(Code)
The key that is used to designate the LRC whose results are to be ignored.



LRC_NOT_CONNECTED_MSG
final public static String LRC_NOT_CONNECTED_MSG(Code)
The error message for not connected to LRC.



LRC_QUERY_IGNORE
final public static int LRC_QUERY_IGNORE(Code)
The LRC query state indicating that LRC has to be ignored.



LRC_QUERY_NORMAL
final public static int LRC_QUERY_NORMAL(Code)
The LRC query state indicating that LRC needs to queried fully. The LRC returns all PFNs irrespective of whether they have a site attribute or not.



LRC_QUERY_RESTRICT
final public static int LRC_QUERY_RESTRICT(Code)
The LRC query state indicating that LRC has to be restricted query. LRC should return only PFNs with site attributes tagged.



LRC_RESTRICT_KEY
final public static String LRC_RESTRICT_KEY(Code)
The key that is used to designate the LRC whose results are to be restricted.



PROXY_KEY
final public static String PROXY_KEY(Code)
The key that if set, specifies the proxy to be picked up while connecting to the RLS.



RLI_NOT_CONNECTED_MSG
final public static String RLI_NOT_CONNECTED_MSG(Code)
The error message for not connected to RLI.



RLI_TIMEOUT_KEY
final public static String RLI_TIMEOUT_KEY(Code)
The key that is used to get hold of the timeout value from the properties object.



RLS_BULK_QUERY_SIZE
final public static int RLS_BULK_QUERY_SIZE(Code)
The number of entries searched in each bulk query to RLS.



RLS_TIMEOUT_KEY
final public static String RLS_TIMEOUT_KEY(Code)
The key that is used to get hold of the timeout value from the properties object.



SITE_ATTRIBUTE
final public static String SITE_ATTRIBUTE(Code)
The attribute in RLS that maps to a site handle.



UNDEFINED_SITE
final public static String UNDEFINED_SITE(Code)
The undefined pool attribute value. The pool attribute is assigned this value if the pfn queried does not have a pool associated with it.



URL_KEY
final public static String URL_KEY(Code)
The key that is used to get hold of the url from the properties object.




Constructor Detail
RLI
public RLI()(Code)
The default constructor, that creates an object which is not linked with any RLS. Use the connect method to connect to the RLS.
See Also:    #connect(Properties).




Method Detail
clear
public int clear()(Code)
Removes everything from all the LRCs that report to this RLI. Use with caution! the number of removed entries.



close
public void close()(Code)
Explicitely free resources before the garbage collection hits.



connect
public boolean connect(String url)(Code)
Establishes a connection to the RLI, picking up the proxy from the default location usually /tmp/ directory.
Parameters:
  url - the url to lrc to connect to. true if connected now, or false to indicate a failure.



connect
public boolean connect(Properties props)(Code)
Establishes a connection to the RLI.
Parameters:
  props - contains all necessary data to establish the link. true if connected now, or false to indicate a failure.



connect
public boolean connect(String url, String proxy)(Code)
Establishes a connection to the RLI.
Parameters:
  url - the url to lrc to connect to.
Parameters:
  proxy - the path to the proxy file to be picked up. null denotesdefault location. true if connected now, or false to indicate a failure.



delete
public int delete(String lfn, String pfn)(Code)
Deletes a specific mapping from the replica catalog. We don't care about the resource handle. More than one entry could theoretically be removed. Upon removal of an entry, all attributes associated with the PFN also evaporate (cascading deletion). It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfn - is the logical filename in the tuple.
Parameters:
  pfn - is the physical filename in the tuple. the number of removed entries.



delete
public int delete(String lfn, ReplicaCatalogEntry tuple)(Code)
Deletes a very specific mapping from the replica catalog. The LFN must be matches, the PFN, and all PFN attributes specified in the replica catalog entry. More than one entry could theoretically be removed. Upon removal of an entry, all attributes associated with the PFN also evaporate (cascading deletion). It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfn - is the logical filename in the tuple.
Parameters:
  tuple - is a description of the PFN and its attributes. the number of removed entries, either 0 or 1.



delete
public int delete(String lfn, String name, Object value)(Code)
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value. This method may be useful to remove all replica entries that have a certain MD5 sum associated with them. It may also be harmful overkill. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfn - is the logical filename to look for.
Parameters:
  name - is the PFN attribute name to look for.
Parameters:
  value - is an exact match of the attribute value to match. the number of removed entries.



delete
public int delete(Map x, boolean matchAttributes)(Code)
Deletes multiple mappings into the replica catalog. The input is a map indexed by the LFN. The value for each LFN key is a collection of replica catalog entries. On setting matchAttributes to false, all entries having matching lfn pfn mapping to an entry in the Map are deleted. However, upon removal of an entry, all attributes associated with the pfn also evaporate (cascaded deletion). The deletes are done in batches.
Parameters:
  x - is a map from logical filename string to list ofreplica catalog entries.
Parameters:
  matchAttributes - whether mapping should be deleted only if allattributes match. the number of deletions.
See Also:   ReplicaCatalogEntry



deleteByResource
public int deleteByResource(String lfn, String handle)(Code)
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found. Karan requested this convenience method, which can be coded like
 delete( lfn, SITE_ATTRIBUTE, handle )
 
It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfn - is the logical filename to look for.
Parameters:
  handle - is the resource handle the number of entries removed.



getBatchSize
protected int getBatchSize()(Code)
Returns the number of lfns in each batch while querying the lrc in the bulk mode. the batch size.



getLRC
public RLSClient.LRC getLRC()(Code)
Gets a handle to the LRC that is associated with the RLS running at url. RLSClient.LRC that points to the RLI that isrunning , or null in case connect method not being called.
See Also:   RLI.mRLIURL



getRLI
public RLSClient.RLI getRLI()(Code)
Gets a handle to the RLI that is associated with the RLS running at url. RLSClient.RLI that points to the RLI that isrunning , or null in case connect method not being called.
See Also:   RLI.mRLIURL



getRLSLRCIgnoreURLs
protected String[] getRLSLRCIgnoreURLs(Properties properties)(Code)
Returns the rls LRC urls to ignore for querying (requested by LIGO). Referred to by the "pegasus.catalog.replica.lrc.ignore" property.
Parameters:
  properties - the properties passed in the connect method. String[] if a comma separated list supplied as the property value,else null



getRLSLRCRestrictURLs
protected String[] getRLSLRCRestrictURLs(Properties properties)(Code)
Returns the rls LRC urls to restrict for querying (requested by LIGO). Referred to by the "pegasus.catalog.replica.lrc.restrict" property.
Parameters:
  properties - the properties passed in the connect method. String[] if a comma separated list supplied as the property value,else null



getTimeout
public int getTimeout(Properties properties)(Code)
It returns the timeout value in seconds after which to timeout in case of no activity from the RLI. Referred to by the "rli.timeout" property.
Parameters:
  properties - the properties passed in the connect method. the timeout value if specified else,the value specified by "rls.timeout" property, elseDEFAULT_RLI_TIMEOUT.
See Also:   RLI.DEFAULT_RLI_TIMEOUT



insert
public int insert(String lfn, ReplicaCatalogEntry tuple)(Code)
Inserts a new mapping into the LRC running at the URL, where the RLI is running.
Parameters:
  lfn - is the logical filename under which to book the entry.
Parameters:
  tuple - is the physical filename and associated PFN attributes. number of insertions, should always be 1. On failure,throws a RuntimeException.



insert
public int insert(String lfn, String pfn, String handle)(Code)
Inserts a new mapping into the LRC running at the URL, where the RLI is running. This is a convenience function exposing the resource handle. Internally, the ReplicaCatalogEntry element will be contructed, and passed to the appropriate insert function.
Parameters:
  lfn - is the logical filename under which to book the entry.
Parameters:
  pfn - is the physical filename associated with it.
Parameters:
  handle - is a resource handle where the PFN resides. number of insertions, should always be 1. On failure,throws a RuntimeException.
See Also:   RLI.insert(String,ReplicaCatalogEntry)
See Also:   ReplicaCatalogEntry



insert
public int insert(Map x)(Code)
Inserts multiple mappings into the replica catalog. The input is a map indexed by the LFN. The value for each LFN key is a collection of replica catalog entries.
Parameters:
  x - is a map from logical filename string to list of replicacatalog entries. the number of insertions.
See Also:   ReplicaCatalogEntry



isClosed
public boolean isClosed()(Code)
Returns whether the connection to the RLS with which this instance is associated is closed or not. true, if the implementation is disassociated, false otherwise.
See Also:   RLI.close()



list
public Set list()(Code)
Lists all logical filenames in the catalog. A set of all logical filenames known to the catalog.



list
public Set list(String constraint)(Code)
Lists a subset of all logical filenames in the catalog.
Parameters:
  constraint - is a constraint for the logical filename only. Itis a string that has some meaning to the implementing system. Thiscan be a SQL wildcard for queries, or a regular expression forJava-based memory collections. A set of logical filenames that match. The set may be empty



lookup
public String lookup(String lfn, String handle)(Code)
Retrieves the entry for a given filename and resource handle from the RLS.
Parameters:
  lfn - is the logical filename to obtain information for.
Parameters:
  handle - is the resource handle to obtain entries for. the (first) matching physical filename, ornull if no match was found.



lookup
public Collection lookup(String lfn)(Code)
Retrieves all entries for a given LFN from the replica catalog. Each entry in the result set is a tuple of a PFN and all its attributes.
Parameters:
  lfn - is the logical filename to obtain information for. a collection of replica catalog entries, or null in case ofunable to connect to RLS.
See Also:   ReplicaCatalogEntry



lookup
public Map lookup(Set lfns)(Code)
Retrieves multiple entries for a given logical filename, up to the complete LRC. It uses the bulk query api to the LRC to query for stuff. Bulk query has been in RLS since version 2.0.8. Internally, the bulk queries are done is sizes specified by variable mBatchSize.
Parameters:
  lfns - is a set of logical filename strings to look up. a map indexed by the LFN. Each value is a collectionof replica catalog entries for the LFN.
See Also:   ReplicaCatalogEntry
See Also:   RLI.getBatchSize()



lookup
public Map lookup(Set lfns, String handle)(Code)
Retrieves multiple entries for a given logical filenames, up to the complete catalog. Retrieving full catalogs should be harmful, but may be helpful in online display or portal.


Parameters:
  lfns - is a set of logical filename strings to look up.
Parameters:
  handle - is the resource handle, restricting the LFNs. a map indexed by the LFN. Each value is a collectionof replica catalog entries (all attributes).
See Also:   ReplicaCatalogEntry




lookup
public Map lookup(Map constraints)(Code)
Retrieves multiple entries for a given logical filename, up to the complete catalog. Retrieving full catalogs should be harmful, but may be helpful in online display or portal.

At present it DOES NOT SUPPORT ATTRIBUTE MATCHING.
Parameters:
  constraints - is mapping of keys 'lfn', 'pfn' to a string thathas some meaning to the implementing system. This can be a SQLwildcard for queries, or a regular expression for Java-based memorycollections. Unknown keys are ignored. Using an empty map requeststhe complete catalog. a map indexed by the LFN. Each value is a collectionof replica catalog entries.
See Also:   ReplicaCatalogEntry




lookupNoAttributes
public Set lookupNoAttributes(String lfn)(Code)
Retrieves all entries for a given LFN from the replica catalog. Each entry in the result set is just a PFN string. Duplicates are reduced through the set paradigm.
Parameters:
  lfn - is the logical filename to obtain information for. a set of PFN strings, or null in case of unable to connectto RLS.



lookupNoAttributes
public Map lookupNoAttributes(Set lfns)(Code)
Retrieves all entries for a given LFN from the replica catalog. Each entry in the result set is just a PFN string. Duplicates are reduced through the set paradigm.
Parameters:
  lfns - is a set of logical filename strings to look up. a map indexed by the LFN. Each value is a collectionof replica catalog entries for the LFN.



lookupNoAttributes
public Map lookupNoAttributes(Set lfns, String handle)(Code)
Retrieves multiple entries for a given logical filename, up to the complete catalog. Retrieving full catalogs should be harmful, but may be helpful in online display or portal.

The noAttributes flag is missing on purpose, because due to the resource handle, attribute lookups are already required.
Parameters:
  lfns - is a set of logical filename strings to look up.
Parameters:
  handle - is the resource handle, restricting the LFNs. a map indexed by the LFN. Each value is a set ofphysical filenames.




main
public static void main(String[] args)(Code)
The main program, for some unit testing.
Parameters:
  args - String[]



remove
public int remove(String lfn)(Code)
Removes all mappings for an LFN from the replica catalog. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfn - is the logical filename to remove all mappings for. the number of removed entries.



remove
public int remove(Set lfns)(Code)
Removes all mappings for a set of LFNs. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  lfns - is a set of logical filename to remove all mappings for. the number of removed entries.



removeByAttribute
public int removeByAttribute(String name, Object value)(Code)
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  name - is the PFN attribute name to look for.
Parameters:
  value - is an exact match of the attribute value to match. the number of removed entries.



removeByAttribute
public int removeByAttribute(String handle)(Code)
Removes all entries associated with a particular resource handle. This is useful, if a site goes offline. It is a convenience method, which calls the generic removeByAttribute method. It can result in a deletion of more than one entry, and from more than one local replica catalog that might be reporting to the RLI.
Parameters:
  handle - is the site handle to remove all entries for. the number of removed entries.
See Also:   RLI.removeByAttribute(String,Object)



setBatchSize
protected void setBatchSize(Properties properties)(Code)
Sets the number of lfns in each batch while querying the lrc in the bulk mode.
Parameters:
  properties - the properties passed while connecting.



Methods inherited from java.lang.Object
native protected Object clone() throws CloneNotSupportedException(Code)(Java Doc)
public boolean equals(Object obj)(Code)(Java Doc)
protected void finalize() throws Throwable(Code)(Java Doc)
final native public Class getClass()(Code)(Java Doc)
native public int hashCode()(Code)(Java Doc)
final native public void notify()(Code)(Java Doc)
final native public void notifyAll()(Code)(Java Doc)
public String toString()(Code)(Java Doc)
final native public void wait(long timeout) throws InterruptedException(Code)(Java Doc)
final public void wait(long timeout, int nanos) throws InterruptedException(Code)(Java Doc)
final public void wait() throws InterruptedException(Code)(Java Doc)

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