Source Code Cross Referenced for GetDAX.java in  » Workflow-Engines » pegasus-2.1.0 » org » griphyn » vdl » toolkit » Java Source Code / Java DocumentationJava Source Code and Java Documentation

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Java Source Code / Java Documentation » Workflow Engines » pegasus 2.1.0 » org.griphyn.vdl.toolkit 
Source Cross Referenced  Class Diagram Java Document (Java Doc) 


001:        /*
002:         * This file or a portion of this file is licensed under the terms of
003:         * the Globus Toolkit Public License, found in file GTPL, or at
004:         * http://www.globus.org/toolkit/download/license.html. This notice must
005:         * appear in redistributions of this file, with or without modification.
006:         *
007:         * Redistributions of this Software, with or without modification, must
008:         * reproduce the GTPL in: (1) the Software, or (2) the Documentation or
009:         * some other similar material which is provided with the Software (if
010:         * any).
011:         *
012:         * Copyright 1999-2004 University of Chicago and The University of
013:         * Southern California. All rights reserved.
014:         */
015:        package org.griphyn.vdl.toolkit;
016:
017:        import java.io.*;
018:        import java.sql.SQLException;
019:        import java.util.Enumeration;
020:        import java.util.ArrayList;
021:        import java.util.StringTokenizer;
022:        import java.util.Iterator;
023:        import org.griphyn.common.util.Version;
024:        import org.griphyn.common.util.Separator;
025:        import org.griphyn.vdl.parser.VDLxParser;
026:        import org.griphyn.vdl.classes.*;
027:        import org.griphyn.vdl.router.*;
028:        import org.griphyn.vdl.dbschema.*;
029:        import org.griphyn.vdl.util.Logging;
030:        import org.griphyn.vdl.util.ChimeraProperties;
031:        import org.griphyn.vdl.directive.*;
032:        import gnu.getopt.*;
033:
034:        /**
035:         * This class generates the DAX per the request for an lfn or a derivation.
036:         *
037:         * @author Jens-S. Vöckler
038:         * @author Yong Zhao
039:         * @version $Revision: 50 $
040:         *
041:         * @see org.griphyn.vdl.router.Route
042:         * @see org.griphyn.vdl.router.BookKeeper
043:         */
044:        public class GetDAX extends Toolkit {
045:            /**
046:             * ctor: Constructs a new instance object with the given application name.
047:             */
048:            public GetDAX(String appName) {
049:                super (appName);
050:            }
051:
052:            /**
053:             * Implements printing the usage string onto stdout.
054:             */
055:            public void showUsage() {
056:                String linefeed = System.getProperty("line.separator", "\r\n");
057:
058:                System.out
059:                        .println("$Id: GetDAX.java 50 2007-05-19 00:48:32Z gmehta $"
060:                                + linefeed
061:                                + "VDS version "
062:                                + Version.instance().toString() + linefeed);
063:
064:                System.out
065:                        .println("Usage: "
066:                                + this .m_application
067:                                + ' '
068:                                + "[-d dbx] [-l label] [-m max] [-o DAX] -n ns -i id -v ver"
069:                                + linefeed
070:                                + "   or: "
071:                                + this .m_application
072:                                + ' '
073:                                + "[-d dbx] [-l label] [-m max] [-o DAX] -f f1[,..] -F lof"
074:                                + linefeed + "       -D d1[,..] -L lod");
075:
076:                System.out
077:                        .println(linefeed
078:                                + "Generic options: "
079:                                + linefeed
080:                                + " -V|--version      print version information and exit."
081:                                + linefeed
082:                                + " -d|--dbase dbx    associates the dbname with the database, unused."
083:                                + linefeed
084:                                + "    --verbose      increases the verbosity level."
085:                                + linefeed
086:                                + " -l|--label label  uses the specified label for the output DAX, default \"test\"."
087:                                + linefeed
088:                                + " -o|--output DAX   writes the generated results into outfn, default is stdout."
089:                                + linefeed
090:                                + " -m|--maxdepth max only search up to the specified depth, default is "
091:                                + Route.MAXIMUM_DEPTH
092:                                + "."
093:                                + linefeed
094:                                + "                   For complex or large graphs, you may want to increase this."
095:                                + linefeed
096:                                + " -X|--xmlns prefix uses an XML namespace prefix for the generated DAX document."
097:                                + linefeed
098:                                + linefeed
099:                                + "Group 1: At least one of these must be used, but none of group 2 below:"
100:                                + linefeed
101:                                + " -n|--namespace ns uses namespace ns to search for matching DVs, default null."
102:                                + linefeed
103:                                + " -i|--name name    uses the specified DV name to search for it, required."
104:                                + linefeed
105:                                + " -v|--ver vs       uses the specified version to narrow DVs, default null."
106:                                + linefeed
107:                                + linefeed
108:                                + "Group 2: All of these may be mixed, but not used with group 1 above:"
109:                                + linefeed
110:                                + " -f|--file fn[,..] requests LFN or a list of LFNs to be materialized."
111:                                + linefeed
112:                                + " -f|--lfn          is a synonym for the --file option."
113:                                + linefeed
114:                                + " -F|--filelist lof read the LFNs from file lolfn, one per line."
115:                                + linefeed
116:                                + " -D|--dv dv[,..]   requests the DV or list of DVs to be produced. Each argument"
117:                                + linefeed
118:                                + "                   is a fully-qualified derivation name namespace::name:version"
119:                                + linefeed
120:                                + "                   with the usual omission rules applying."
121:                                + linefeed
122:                                + " -D|--derivation   is a synonym for the --dv option."
123:                                + linefeed
124:                                + " -L|--dvlist lodvs read the DVs from file lodvs, one per line."
125:                                + linefeed);
126:
127:                System.out
128:                        .println("The following exit codes are produced:"
129:                                + linefeed
130:                                + " 0  :-)  Success"
131:                                + linefeed
132:                                + " 1  :-|  Empty result while "
133:                                + m_application
134:                                + " still ran successfully."
135:                                + linefeed
136:                                + " 2  :-(  Runtime error detected by "
137:                                + m_application
138:                                + ", please read the message."
139:                                + linefeed
140:                                + " 3  8-O  Fatal error merits a program abortion. Please carefully check your"
141:                                + linefeed
142:                                + "         configuration files and setup before filing a bug report."
143:                                + linefeed);
144:            }
145:
146:            /**
147:             * Creates a set of options.
148:             */
149:            protected LongOpt[] generateValidOptions() {
150:                LongOpt[] lo = new LongOpt[20];
151:
152:                lo[0] = new LongOpt("dbase", LongOpt.REQUIRED_ARGUMENT, null,
153:                        'd');
154:                lo[1] = new LongOpt("version", LongOpt.NO_ARGUMENT, null, 'V');
155:                lo[2] = new LongOpt("help", LongOpt.NO_ARGUMENT, null, 'h');
156:                lo[3] = new LongOpt("verbose", LongOpt.NO_ARGUMENT, null, 1);
157:
158:                lo[4] = new LongOpt("label", LongOpt.REQUIRED_ARGUMENT, null,
159:                        'l');
160:                lo[5] = new LongOpt("output", LongOpt.REQUIRED_ARGUMENT, null,
161:                        'o');
162:                lo[6] = new LongOpt("maxdepth", LongOpt.REQUIRED_ARGUMENT,
163:                        null, 'm');
164:                lo[7] = new LongOpt("xmlns", LongOpt.REQUIRED_ARGUMENT, null,
165:                        'X');
166:
167:                lo[8] = new LongOpt("namespace", LongOpt.REQUIRED_ARGUMENT,
168:                        null, 'n');
169:                lo[9] = new LongOpt("ns", LongOpt.REQUIRED_ARGUMENT, null, 'n');
170:                lo[10] = new LongOpt("name", LongOpt.REQUIRED_ARGUMENT, null,
171:                        'i');
172:                lo[11] = new LongOpt("id", LongOpt.REQUIRED_ARGUMENT, null, 'i');
173:                lo[12] = new LongOpt("ver", LongOpt.REQUIRED_ARGUMENT, null,
174:                        'v');
175:                lo[13] = new LongOpt("vs", LongOpt.REQUIRED_ARGUMENT, null, 'v');
176:
177:                lo[14] = new LongOpt("file", LongOpt.REQUIRED_ARGUMENT, null,
178:                        'f');
179:                lo[15] = new LongOpt("lfn", LongOpt.REQUIRED_ARGUMENT, null,
180:                        'f');
181:                lo[16] = new LongOpt("filelist", LongOpt.REQUIRED_ARGUMENT,
182:                        null, 'F');
183:                lo[17] = new LongOpt("derivation", LongOpt.REQUIRED_ARGUMENT,
184:                        null, 'D');
185:                lo[18] = new LongOpt("dv", LongOpt.REQUIRED_ARGUMENT, null, 'D');
186:                lo[19] = new LongOpt("dvlist", LongOpt.REQUIRED_ARGUMENT, null,
187:                        'L');
188:
189:                return lo;
190:            }
191:
192:            /**
193:             * Get the request for a dv or an lfn and generate the corresponding
194:             * DAX.
195:             */
196:            public static void main(String[] args) {
197:                int result = 0;
198:                int verbose = 0;
199:                Writer bw = null;
200:                DatabaseSchema dbschema = null;
201:                GetDAX me = null;
202:
203:                try {
204:                    me = new GetDAX("gendax");
205:                    if (args.length == 0) {
206:                        me.showUsage();
207:                        return;
208:                    }
209:
210:                    // get the commandline options
211:                    Getopt opts = new Getopt(me.m_application, args,
212:                            "hd:m:n:i:v:o:f:l:D:F:L:VX:", me
213:                                    .generateValidOptions());
214:                    opts.setOpterr(false);
215:
216:                    boolean flag = false;
217:                    String xmlns = null;
218:                    String arg = null;
219:                    String label = null;
220:                    String dbase = null;
221:                    String ns = null;
222:                    String id = null;
223:                    String vs = null;
224:                    String fn = null;
225:                    int maxdepth = -1;
226:                    ArrayList derivations = new ArrayList();
227:                    ArrayList filenames = new ArrayList();
228:
229:                    int option = 0;
230:                    while ((option = opts.getopt()) != -1) {
231:                        switch (option) {
232:                        case 1:
233:                            verbose++;
234:                            me.increaseVerbosity();
235:                            break;
236:
237:                        case 'V':
238:                            System.out
239:                                    .println("$Id: GetDAX.java 50 2007-05-19 00:48:32Z gmehta $");
240:                            System.out.println("VDS version "
241:                                    + Version.instance().toString());
242:                            return;
243:
244:                        case 'X':
245:                            xmlns = opts.getOptarg();
246:                            break;
247:
248:                        case 'D':
249:                            arg = opts.getOptarg();
250:                            if (arg != null) {
251:                                StringTokenizer st = new StringTokenizer(arg,
252:                                        ",", false);
253:                                while (st.hasMoreTokens())
254:                                    derivations.add(st.nextToken());
255:                            }
256:                            break;
257:
258:                        case 'd':
259:                            dbase = opts.getOptarg();
260:                            break;
261:
262:                        case 'F':
263:                            arg = opts.getOptarg();
264:                            if (arg != null) {
265:                                int nr = me.readFile(arg, filenames);
266:                                me.m_logger.log("app", 1, "read " + nr
267:                                        + " LFNs from " + arg);
268:                            }
269:                            break;
270:
271:                        case 'f':
272:                            arg = opts.getOptarg();
273:                            if (arg != null) {
274:                                StringTokenizer st = new StringTokenizer(arg,
275:                                        ",", false);
276:                                while (st.hasMoreTokens())
277:                                    filenames.add(st.nextToken());
278:                            }
279:                            break;
280:
281:                        case 'L':
282:                            arg = opts.getOptarg();
283:                            if (arg != null) {
284:                                int nr = me.readFile(arg, derivations);
285:                                me.m_logger.log("app", 1, "read " + nr
286:                                        + " DV names from " + arg);
287:                            }
288:                            break;
289:
290:                        case 'l':
291:                            arg = opts.getOptarg();
292:                            if (arg != null)
293:                                label = arg;
294:                            break;
295:
296:                        case 'm':
297:                            arg = opts.getOptarg();
298:                            if (arg != null)
299:                                maxdepth = Integer.valueOf(arg).intValue();
300:                            break;
301:
302:                        case 'n':
303:                            arg = opts.getOptarg();
304:                            if (arg != null) {
305:                                ns = arg;
306:                                flag = true;
307:                            }
308:                            break;
309:
310:                        case 'i':
311:                            arg = opts.getOptarg();
312:                            if (arg != null) {
313:                                id = arg;
314:                                flag = true;
315:                            }
316:                            break;
317:
318:                        case 'v':
319:                            arg = opts.getOptarg();
320:                            if (arg != null) {
321:                                vs = arg;
322:                                flag = true;
323:                            }
324:                            break;
325:
326:                        case 'o':
327:                            arg = opts.getOptarg();
328:                            if (arg != null)
329:                                fn = arg;
330:                            break;
331:
332:                        case 'h':
333:                            me.showUsage();
334:                            return;
335:
336:                        default:
337:                            me.showUsage();
338:                            throw new RuntimeException(
339:                                    "Incorrect option or option usage");
340:                        }
341:                    }
342:
343:                    // you can use either the pattern match, or -D and -f
344:                    int group2 = derivations.size() + filenames.size();
345:                    if (!flag && group2 == 0) {
346:                        me.showUsage();
347:                        throw new RuntimeException(
348:                                "You must specify either group 1 (-n -i -v) or group 2 (-f -F -L -D) options!");
349:                    }
350:
351:                    // bug#90/91: warn about mixing options groups
352:                    if (flag && group2 > 0) {
353:                        me.m_logger
354:                                .log("default", 0,
355:                                        "Warning: You are mixing group 1 and group 2 options!");
356:                    }
357:
358:                    // bug#90/91: require name in group1 options.
359:                    if (flag && (id == null || id.length() == 0)) {
360:                        throw new RuntimeException(
361:                                "Group 1 options require -i|--name");
362:                    }
363:
364:                    // Connect the database.
365:                    String schemaName = ChimeraProperties.instance()
366:                            .getVDCSchemaName();
367:
368:                    Connect connect = new Connect();
369:                    dbschema = connect.connectDatabase(schemaName);
370:                    Explain explain = new Explain(dbschema);
371:
372:                    // constraint on search
373:                    if (maxdepth >= 0)
374:                        explain.setMaximumDepth(maxdepth);
375:
376:                    // Make the request.
377:                    if (flag)
378:                        explain.requestDerivation(ns, id, vs);
379:                    if (filenames.size() > 0)
380:                        explain.requestLFN(filenames);
381:                    if (derivations.size() > 0) {
382:                        int size = derivations.size();
383:                        int count = 1;
384:                        for (Iterator i = derivations.iterator(); i.hasNext(); count++) {
385:                            String what = (String) i.next();
386:                            me.m_logger.log("app", 2, "requesting " + what
387:                                    + " (" + count + "/" + size + ")");
388:                            explain.requestDerivation(what);
389:                        }
390:                    }
391:
392:                    // show the DAX
393:                    if (fn != null) {
394:                        // save to file
395:                        me.m_logger.log("app", 1, "saving output to " + fn);
396:                        bw = new BufferedWriter(new FileWriter(fn));
397:                    } else {
398:                        // somebody may have redirected stdout, thus buffer!
399:                        bw = new BufferedWriter(new PrintWriter(System.out));
400:                    }
401:
402:                    // write resulting DAX
403:                    explain.writeDAX(bw, label, xmlns);
404:                    bw.flush();
405:                    bw.close();
406:
407:                    // fail on empty requested?
408:                    if (explain.isEmpty()) {
409:                        System.err.println("ERROR: The resulting DAX is empty");
410:                        result = 1;
411:                    }
412:
413:                    dbschema.close();
414:                } catch (IOException ioe) {
415:                    System.err.println("IO ERROR: " + ioe.getMessage());
416:                    if (verbose > 0)
417:                        ioe.printStackTrace(System.err);
418:                    result = 2;
419:                } catch (RuntimeException rte) {
420:                    System.err.println("RT ERROR: " + rte.getMessage());
421:                    if (verbose > 0)
422:                        rte.printStackTrace(System.err);
423:                    result = 2;
424:                } catch (Exception e) {
425:                    e.printStackTrace(System.err);
426:                    System.err.println("FATAL: " + e.getMessage());
427:                    result = 3;
428:                }
429:                if (result != 0)
430:                    System.exit(result);
431:            }
432:        }
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