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Java Source Code / Java Documentation » Development » jgap » org.jgap

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Class Diagram

Java Document (Java Doc)

java.lang .Object

org.jgap .BaseChromosome

All known Subclasses:   org.jgap .Chromosome,
BaseChromosome
abstract public class BaseChromosome implements IChromosome,IInitializer,IPersistentRepresentation,IBusinessKey(Code)
Base class for any implementation of interface IChromosome.
author:
   Klaus Meffert
since:
   3.0

Field Summary
final public static String CHROM_DELIMITER
     Separates chromosome-related information.
final public static String GENE_DELIMITER
     This field separates gene class name from the gene persistent representation string.
final public static String GENE_DELIMITER_CLOSING
     Represents the closing delimiter that is used to separate genes in the persistent representation of Chromosome instances.
final public static String GENE_DELIMITER_HEADING
     Represents the heading delimiter that is used to separate genes in the persistent representation of Chromosome instances.

Constructor Summary
public BaseChromosome(Configuration a_configuration)
     The only constructor in this class.

Method Summary
abstract public Object clone()
     Creates and returns a copy of this object.
protected Gene createGene(String a_geneClassName, String a_persistentRepresentation)
     Creates a new Gene instance.
Taken from CompositeGene.
protected String decode(String a_string)

protected String encode(String a_string)

public int getAge()
     0: Chromosome newly created in this generation.
public String getBusinessKey()

public Configuration getConfiguration()

public synchronized Gene getGene(int a_desiredLocus)
     Returns the Gene at the given index (locus) within the Chromosome.
public synchronized Gene[] getGenes()
     Retrieves the set of genes that make up this Chromosome.
public StringBuffer getGenesPersistentRepresentation()

public void getGenesPersistentRepresentation(StringBuffer a_buffer)

public String getPersistentRepresentation()
     Returns a persistent representation of this chromosome, see interface Gene for description.
public void increaseAge()
     Increases the number of evolutionary rounds of chromosome in which it has not been changed by one.
public void increaseOperatedOn()
     Increase information of number of genetic operations performed on chromosome in current evolution round.
public int operatedOn()

public void resetAge()
     Reset age of chromosome because it has been changed.
public void resetOperatedOn()
     Resets the information of how many genetic operators have been performed on the chromosome in the current round of evolution.
public void setGene(int a_index, Gene a_gene)

public void setGenes(Gene[] a_genes)
     Sets the genes for the chromosome.
public void setValueFromPersistentRepresentation(String a_representation)
     Counterpart of getPersistentRepresentation.
public int size()
     Returns the size of this Chromosome (the number of genes it contains).
final protected static List split(String a_string)
     Splits the input a_string into individual gene representations.
Taken and adapted from CompositeGene.

Field Detail
CHROM_DELIMITER
final public static String CHROM_DELIMITER(Code)
Separates chromosome-related information.

GENE_DELIMITER
final public static String GENE_DELIMITER(Code)
This field separates gene class name from the gene persistent representation string. '*' does not work properly with URLEncoder!

GENE_DELIMITER_CLOSING
final public static String GENE_DELIMITER_CLOSING(Code)
Represents the closing delimiter that is used to separate genes in the persistent representation of Chromosome instances.

GENE_DELIMITER_HEADING
final public static String GENE_DELIMITER_HEADING(Code)
Represents the heading delimiter that is used to separate genes in the persistent representation of Chromosome instances.

Constructor Detail
BaseChromosome
public BaseChromosome(Configuration a_configuration) throws InvalidConfigurationException(Code)
The only constructor in this class. Sets the immutable configuration.
Parameters:
  a_configuration - the configuration to set
throws:
  InvalidConfigurationException - if configuration is null
author:
   Klaus Meffert
since:
   3.0

Method Detail
clone
abstract public Object clone()(Code)
Creates and returns a copy of this object. a clone of this instance
throws:
  IllegalStateException - instead of CloneNotSupportedException
author:
   Klaus Meffert
since:
   3.0

createGene
protected Gene createGene(String a_geneClassName, String a_persistentRepresentation) throws Exception(Code)
Creates a new Gene instance.
Taken from CompositeGene.
Parameters:
  a_geneClassName - name of the gene class
Parameters:
  a_persistentRepresentation - persistent representation of the gene tocreate (could be obtained via getPersistentRepresentation) newly created gene
throws:
  Exception -
author:
   Klaus Meffert
since:
   3.2

decode
protected String decode(String a_string) throws UnsupportedEncodingException(Code)

encode
protected String encode(String a_string)(Code)

getAge
public int getAge()(Code)
0: Chromosome newly created in this generation. This means itdoes not need being crossed over with another newly created one
author:
   Klaus Meffert
since:
   3.2

getBusinessKey
public String getBusinessKey()(Code)
business key of the chromosome
author:
   Klaus Meffert
since:
   3.2

getConfiguration
public Configuration getConfiguration()(Code)
the configuration used
author:
   Klaus Meffert
since:
   3.0

getGene
public synchronized Gene getGene(int a_desiredLocus)(Code)
Returns the Gene at the given index (locus) within the Chromosome. The first gene is at index zero and the last gene is at the index equal to the size of this Chromosome - 1.
Parameters:
  a_desiredLocus - index of the gene value to be returned Gene at the given index
author:
   Neil Rotstan
since:
   1.0

getGenes
public synchronized Gene[] getGenes()(Code)
Retrieves the set of genes that make up this Chromosome. This method exists primarily for the benefit of GeneticOperators that require the ability to manipulate Chromosomes at a low level. an array of the Genes contained within this Chromosome
author:
   Neil Rotstan
since:
   1.0

getGenesPersistentRepresentation
public StringBuffer getGenesPersistentRepresentation()(Code)

getGenesPersistentRepresentation
public void getGenesPersistentRepresentation(StringBuffer a_buffer)(Code)

getPersistentRepresentation
public String getPersistentRepresentation()(Code)
Returns a persistent representation of this chromosome, see interface Gene for description. Similar to CompositeGene's routine. But does not include all information of the chromosome (yet). string representation of this Chromosome's relevant parts of itscurrent state
throws:
  UnsupportedOperationException -
author:
   Klaus Meffert
since:
   3.2

increaseAge
public void increaseAge()(Code)
Increases the number of evolutionary rounds of chromosome in which it has not been changed by one.
author:
   Klaus Meffert
since:
   3.2

increaseOperatedOn
public void increaseOperatedOn()(Code)
Increase information of number of genetic operations performed on chromosome in current evolution round.
author:
   Klaus Meffert
since:
   3.2

operatedOn
public int operatedOn()(Code)
number of genetic operations performed on chromosome in currentevolution round
author:
   Klaus Meffert
since:
   3.2

resetAge
public void resetAge()(Code)
Reset age of chromosome because it has been changed.
author:
   Klaus Meffert
since:
   3.2

resetOperatedOn
public void resetOperatedOn()(Code)
Resets the information of how many genetic operators have been performed on the chromosome in the current round of evolution.
author:
   Klaus Meffert
since:
   3.2

setGene
public void setGene(int a_index, Gene a_gene)(Code)

setGenes
public void setGenes(Gene[] a_genes) throws InvalidConfigurationException(Code)
Sets the genes for the chromosome.
Parameters:
  a_genes - the genes to set for the chromosome
throws:
  InvalidConfigurationException - in case constraint checker isprovided
author:
   Klaus Meffert
since:
   3.2 (previously in class Chromosome)

setValueFromPersistentRepresentation
public void setValueFromPersistentRepresentation(String a_representation) throws UnsupportedRepresentationException(Code)
Counterpart of getPersistentRepresentation.
Parameters:
  a_representation - the string representation retrieved from a priorcall to the getPersistentRepresentation() method
throws:
  UnsupportedRepresentationException -
author:
   Klaus Meffert
since:
   3.2

size
public int size()(Code)
Returns the size of this Chromosome (the number of genes it contains). A Chromosome's size is constant and will not change, until setGenes(...) is used. number of genes contained within this Chromosome instance
author:
   Neil Rotstan
author:
   Klaus Meffert
since:
   1.0

split
final protected static List split(String a_string) throws UnsupportedRepresentationException(Code)
Splits the input a_string into individual gene representations.
Taken and adapted from CompositeGene.
Parameters:
  a_string - the string to split the elements of the returned array are the persistentrepresentation strings of the chromosome's components
throws:
  UnsupportedRepresentationException -
author:
   Klaus Meffert
since:
   3.2

Methods inherited from java.lang.Object
native protected Object clone() throws CloneNotSupportedException(Code)(Java Doc)
public boolean equals(Object obj)(Code)(Java Doc)
protected void finalize() throws Throwable(Code)(Java Doc)
final native public Class getClass()(Code)(Java Doc)
native public int hashCode()(Code)(Java Doc)
final native public void notify()(Code)(Java Doc)
final native public void notifyAll()(Code)(Java Doc)
public String toString()(Code)(Java Doc)
final native public void wait(long timeout) throws InterruptedException(Code)(Java Doc)
final public void wait(long timeout, int nanos) throws InterruptedException(Code)(Java Doc)
final public void wait() throws InterruptedException(Code)(Java Doc)

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